Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02475Hypothetical protein. (203 aa)    
Predicted Functional Partners:
C804_02476
Hypothetical protein.
       0.788
C804_01661
Hypothetical protein.
   
 0.611
C804_04113
Hypothetical protein.
   
 0.611
gpsA
Hypothetical protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.602
C804_04020
Hypothetical protein.
  
     0.591
C804_05757
Sigma-70 family RNA polymerase sigma factor.
  
     0.584
C804_03359
Hypothetical protein.
  
     0.578
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 0.572
C804_00020
Hypothetical protein.
  
     0.565
C804_01115
Hypothetical protein.
   
  0.564
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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