Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02585Hypothetical protein. (290 aa)    
Predicted Functional Partners:
C804_02587
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.999
C804_01934
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.997
C804_01935
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region.
 0.996
C804_02586
Polar amino acid transport system ATP-binding protein.
 
 0.992
C804_01932
Hypothetical protein.
 
 0.983
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.934
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
  0.916
argH
Argininosuccinate lyase.
  
  
 0.913
C804_05636
Chorismate mutase.
    
 0.895
C804_05628
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.868
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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