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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_02609Hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1021 aa)    
Predicted Functional Partners:
C804_02610
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.997
C804_04536
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.968
C804_00252
Hypothetical protein.
  
 0.959
C804_02162
Hypothetical protein.
  
 0.959
C804_02314
Preprotein translocase, YajC subunit.
  
 
 
 0.909
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
 
 0.897
C804_02795
Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.
 
  
 0.615
C804_02796
Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.575
C804_02794
Hypothetical protein.
 
  
 0.572
C804_04499
Hypothetical protein.
   
 0.564
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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