Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02629Stage III sporulation protein AG. (211 aa)    
Predicted Functional Partners:
C804_02628
Hypothetical protein.
 
  
 0.991
C804_02631
Stage III sporulation protein AE.
 
  
 0.989
C804_02635
Stage III sporulation protein AA.
 
  
 0.986
C804_02632
Stage III sporulation protein AD.
 
  
 0.973
C804_02634
Stage III sporulation protein AB.
 
  
 0.959
C804_02633
Stage III sporulation protein AC.
 
  
 0.946
C804_03918
Sporulation transcriptional regulator SpoIIID.
  
  
 0.793
C804_03325
Stage II sporulation protein P.
  
  
 0.776
C804_02630
Hypothetical protein.
       0.773
C804_00811
Stage IV sporulation protein A.
  
  
 0.753
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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