Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02877Hypothetical protein. (693 aa)    
Predicted Functional Partners:
C804_02876
Hypothetical protein.
 
 
 0.986
C804_01314
Hypothetical protein.
  
 
 0.790
C804_01386
Hypothetical protein.
  
 
 0.790
C804_04310
Hypothetical protein.
  
 
 0.790
C804_05328
DrrB family ABC transporter efflux protein.
  
 
 0.790
C804_03988
Hypothetical protein.
  
 
 0.750
C804_02875
Carboxynorspermidine decarboxylase.
       0.745
C804_01352
Hypothetical protein.
 
 
 0.664
C804_02874
Saccharopine dehydrogenase (NAD+, L-lysine forming).
       0.658
C804_00326
Hypothetical protein.
 
 
 0.652
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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