Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02893Hypothetical protein. (321 aa)    
Predicted Functional Partners:
C804_04506
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.852
C804_02892
Carbohydrate ABC transporter substrate-binding protein.
 
     0.821
C804_03756
Hypothetical protein.
 
 
 
 0.811
C804_02888
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase.
 
     0.798
C804_06438
Hypothetical protein.
 
0.798
C804_00479
Hypothetical protein.
 
0.788
C804_01727
Hypothetical protein.
 
 
 
 0.784
C804_01619
Hypothetical protein.
  
 
   0.758
C804_04886
Hypothetical protein.
  
 
   0.748
C804_00852
D-galactosyl-beta-1-3-N-acetyl-D-hexosamine phosphorylase.
 
     0.741
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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