Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_02895Hypothetical protein. (206 aa)    
Predicted Functional Partners:
C804_00430
Flagellar motor switch protein FliM.
 
 0.999
C804_02422
Hypothetical protein.
 
 0.998
C804_00094
Two-component system, chemotaxis family, response regulator CheV.
  
 0.997
C804_00446
Flagellar motor switch protein FliG.
 
 0.997
C804_00449
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
 
 0.994
C804_02221
Hypothetical protein.
  
 0.993
C804_00447
Hypothetical protein.
 
 0.992
cheD
Hypothetical protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
 0.991
C804_00429
Flagellar motor switch protein FliN.
  
 0.989
C804_00568
Hypothetical protein.
  
 0.989
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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