Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03029Hypothetical protein. (255 aa)    
Predicted Functional Partners:
C804_06208
Hypothetical protein.
 
     0.957
C804_05909
Hypothetical protein.
 
     0.951
C804_05784
Hypothetical protein.
 
     0.934
C804_05264
Hypothetical protein.
 
     0.932
C804_03028
Hypothetical protein.
 
     0.699
C804_06162
Hypothetical protein.
 
     0.666
C804_05908
Hypothetical protein.
 
     0.641
C804_06146
Hypothetical protein.
 
     0.634
C804_06102
Hypothetical protein.
 
     0.605
C804_06205
Hypothetical protein.
     0.504
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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