Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03089Hypothetical protein. (376 aa)    
Predicted Functional Partners:
C804_03093
Hypothetical protein.
 
     0.884
C804_03095
UDP-glucose 4-epimerase.
 
 
  0.858
C804_03088
Asparagine synthase (glutamine-hydrolyzing).
 
  
  0.850
C804_03091
Hypothetical protein.
 
    
0.840
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.800
C804_03090
Hypothetical protein.
       0.773
C804_05927
Hypothetical protein.
 
 
  0.726
C804_03087
Hypothetical protein.
 
    
0.715
C804_01161
Hypothetical protein.
  
     0.703
C804_01661
Hypothetical protein.
 
 0.700
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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