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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_03232Hypothetical protein. (170 aa)    
Predicted Functional Partners:
C804_03233
Hypothetical protein.
       0.773
C804_03234
Hypothetical protein.
       0.660
C804_05636
Chorismate mutase.
    
  0.587
C804_04433
Hypothetical protein.
  
     0.550
C804_01509
Hypothetical protein.
  
     0.520
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.495
C804_02259
Hypothetical protein.
  
 
  0.487
C804_03110
Pseudaminic acid biosynthesis-associated protein PseG.
  
 
 0.485
C804_03236
Hypothetical protein.
 
     0.480
C804_06052
Hypothetical protein.
 
  
  0.466
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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