Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03348Hypothetical protein. (112 aa)    
Predicted Functional Partners:
C804_05718
Hypothetical protein.
   
 0.907
C804_00020
Hypothetical protein.
   
 0.781
C804_02344
Hypothetical protein.
   
 0.781
C804_04876
Hypothetical protein.
   
 0.781
C804_01030
Hypothetical protein.
  
  
 0.614
C804_02839
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
     
 0.612
C804_01022
Hypothetical protein.
  
  
 0.609
C804_02768
Hypothetical protein.
     
 0.600
C804_01790
Hypothetical protein.
     
  0.562
C804_06341
Hypothetical protein.
     
  0.562
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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