Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03359Hypothetical protein. (150 aa)    
Predicted Functional Partners:
C804_02475
Hypothetical protein.
  
     0.578
C804_04201
YD repeat (two copies).
  
 
  0.578
C804_04204
YD repeat (two copies).
  
 
  0.578
C804_02527
Hypothetical protein.
  
     0.565
C804_03360
Hypothetical protein.
       0.558
C804_01363
Hypothetical protein.
 
  
 0.534
C804_04020
Hypothetical protein.
  
     0.506
C804_03705
Hypothetical protein.
  
     0.499
C804_04888
Hypothetical protein.
    
 0.474
C804_05519
Hypothetical protein.
    
 0.474
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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