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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_03426Hypothetical protein. (364 aa)    
Predicted Functional Partners:
C804_03427
PAS domain S-box protein.
 0.987
C804_04147
Hypothetical protein.
 0.986
C804_05623
Hypothetical protein.
 0.984
C804_02221
Hypothetical protein.
  
 0.951
C804_03331
Hypothetical protein.
 0.950
C804_03950
Hypothetical protein.
 0.950
C804_00568
Hypothetical protein.
 0.948
C804_05628
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.918
C804_04091
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.866
C804_05605
Hypothetical protein.
 
 0.866
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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