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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_03445Hypothetical protein; Belongs to the UPF0735 family. (145 aa)    
Predicted Functional Partners:
C804_05636
Chorismate mutase.
  
 
 0.963
C804_00059
Hypothetical protein.
     
 0.947
C804_03444
Hypothetical protein.
 
  
  0.875
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.836
C804_00797
Methionine synthase.
    
  0.810
C804_03443
Aspartate kinase; Belongs to the aspartokinase family.
     
 0.712
C804_00796
Threonine synthase.
    
 0.592
C804_00017
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
    
  0.512
C804_01189
Branched-chain amino acid aminotransferase.
    
  0.505
C804_03446
Hypothetical protein.
       0.468
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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