Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03464Hypothetical protein. (811 aa)    
Predicted Functional Partners:
C804_04835
Hypothetical protein.
 
  
 
0.821
C804_03657
Hypothetical protein.
  
  
  0.801
C804_04502
Phosphoglucomutase.
    
 0.786
C804_04438
Glucose-1-phosphate cytidylyltransferase.
    
  0.768
C804_02271
Hypothetical protein.
     
  0.751
C804_02747
Sucrose phosphorylase.
     
  0.751
C804_00889
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.690
C804_04832
Hypothetical protein.
  
  
 0.664
C804_04887
Hypothetical protein.
 
  
 0.650
C804_02750
Hypothetical protein.
 
  
 0.645
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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