Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03480Hypothetical protein. (59 aa)    
Predicted Functional Partners:
C804_03479
Hypothetical protein; Belongs to the 'phage' integrase family.
 
     0.874
C804_03481
Hypothetical protein.
 
     0.871
C804_03240
Hypothetical protein.
 
     0.785
C804_06353
Hypothetical protein.
 
     0.773
C804_03225
Hypothetical protein.
 
     0.771
C804_03222
Hypothetical protein.
 
     0.761
C804_06357
Hypothetical protein.
 
     0.759
C804_03478
Hypothetical protein.
       0.751
C804_06358
Hypothetical protein.
 
     0.729
C804_03221
Hypothetical protein.
 
     0.691
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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