STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_03482Hypothetical protein. (140 aa)    
Predicted Functional Partners:
C804_01941
Hypothetical protein.
  
  
  0.591
C804_01940
Hypothetical protein.
  
  
  0.576
C804_00038
Hypothetical protein.
 
    0.564
C804_01546
Hypothetical protein.
 
  
 0.488
C804_03640
Hypothetical protein.
  
 
  0.472
C804_06203
Hypothetical protein.
    
 0.459
C804_02871
Hypothetical protein.
  
  
  0.453
ureC
Urease subunit alpha.
    
  0.452
C804_05636
Chorismate mutase.
    
  0.450
C804_00181
Hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.445
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.