STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_03486Hypothetical protein. (556 aa)    
Predicted Functional Partners:
C804_03487
Hypothetical protein.
       0.709
C804_02841
Hypothetical protein.
  
     0.657
C804_04227
Hypothetical protein.
  
     0.651
C804_02848
Hypothetical protein.
  
     0.634
C804_04568
Hypothetical protein.
  
     0.617
C804_02760
Hypothetical protein.
  
     0.609
C804_02764
Hypothetical protein.
  
     0.560
C804_02761
Hypothetical protein.
  
     0.553
C804_03488
Hypothetical protein.
       0.517
C804_03484
Hypothetical protein.
 
     0.498
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.