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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_03549Hypothetical protein. (240 aa)    
Predicted Functional Partners:
C804_04056
RecQ family ATP-dependent DNA helicase.
  
 0.976
C804_04816
ATP-dependent DNA helicase RecQ.
  
 0.910
C804_03548
Hypothetical protein.
       0.773
C804_03550
Hypothetical protein.
  
    0.765
C804_03547
Hypothetical protein.
       0.709
C804_03551
Hypothetical protein.
  
  
 0.638
C804_03552
Hypothetical protein.
  
    0.621
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
 0.597
C804_01661
Hypothetical protein.
  
 
 0.560
C804_04113
Hypothetical protein.
  
 
 0.560
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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