Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04022Hypothetical protein; Belongs to the 'phage' integrase family. (592 aa)    
Predicted Functional Partners:
C804_06150
Hypothetical protein.
  
     0.708
C804_06432
Hypothetical protein.
  
     0.700
C804_06121
Hypothetical protein.
  
     0.699
C804_06117
Hypothetical protein.
  
     0.677
C804_06205
Hypothetical protein.
  
     0.669
C804_06617
Hypothetical protein.
  
     0.612
C804_06148
Hypothetical protein.
  
     0.601
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
  0.590
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
  0.582
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
  0.582
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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