Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04082Hypothetical protein. (512 aa)    
Predicted Functional Partners:
C804_04084
Hypothetical protein.
 
  
 0.961
C804_02221
Hypothetical protein.
   
 0.864
C804_00527
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.838
C804_00183
Hypothetical protein.
 
 
0.830
C804_00568
Hypothetical protein.
    
 0.829
C804_03950
Hypothetical protein.
    
 0.829
C804_03281
Hypothetical protein.
 
 
0.817
C804_00510
Hypothetical protein.
     
 0.786
C804_04083
Acyl carrier protein.
 
  
 0.766
C804_05369
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
  0.746
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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