Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04086Hypothetical protein. (145 aa)    
Predicted Functional Partners:
C804_04084
Hypothetical protein.
 
     0.937
C804_04085
Hypothetical protein.
 
     0.850
C804_02863
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
   0.801
C804_01490
Hypothetical protein.
  
     0.659
C804_04082
Hypothetical protein.
 
     0.656
C804_05100
Hypothetical protein.
  
     0.642
C804_01082
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.599
C804_04087
Hypothetical protein.
 
     0.569
C804_04083
Acyl carrier protein.
 
     0.531
C804_04726
Hypothetical protein.
  
     0.522
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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