Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04092uroporphyrinogen-III C-methyltransferase. (466 aa)    
Predicted Functional Partners:
C804_03010
precorrin-3B C17-methyltransferase.
 
 
 0.986
C804_03011
Precorrin-6x reductase.
 
 
 0.980
C804_03009
Hypothetical protein.
 
  
 0.978
C804_01323
Hypothetical protein.
  
  
 0.967
C804_02993
Hypothetical protein.
    
 0.963
C804_03008
Precorrin-4 C11-methyltransferase.
 
 
0.958
C804_05965
Hypothetical protein.
  
 
 0.910
C804_01836
Hypothetical protein.
  
 
 0.909
C804_00121
Hypothetical protein.
  
 
 0.901
C804_00674
Hypothetical protein.
  
 
 0.901
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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