Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04366Hypothetical protein. (378 aa)    
Predicted Functional Partners:
C804_02863
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
  0.759
thrS
threonine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.754
C804_00457
Hypothetical protein.
    
 0.733
C804_04447
Hypothetical protein.
     
  0.708
C804_04448
Hypothetical protein.
     
  0.708
C804_00593
Hypothetical protein.
  
 
  0.694
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
  0.694
C804_04502
Phosphoglucomutase.
  
 
  0.694
C804_00183
Hypothetical protein.
     
  0.646
C804_00327
Hypothetical protein.
     
  0.646
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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