Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04375Hypothetical protein. (360 aa)    
Predicted Functional Partners:
C804_01912
Hypothetical protein.
  
  
 0.711
C804_04366
Hypothetical protein.
   
  0.563
C804_01661
Hypothetical protein.
  
 
 0.520
C804_04113
Hypothetical protein.
  
 
 0.520
C804_04374
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.513
C804_04506
Undecaprenyl-phosphate glucose phosphotransferase.
 
  
 0.485
C804_00507
Hypothetical protein.
  
 
 0.484
thrS
threonine-tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
  0.474
C804_06024
Methionine biosynthesis protein MetW.
 
 
 0.472
C804_04095
Hypothetical protein.
 
  
  0.471
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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