Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04397Hypothetical protein. (2176 aa)    
Predicted Functional Partners:
C804_05235
Hypothetical protein.
   
  0.739
C804_04024
Hypothetical protein.
  
 
 0.620
C804_01133
Hypothetical protein.
  
 
 0.577
C804_05234
HK97 family phage major capsid protein.
   
   0.576
C804_01764
Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
    
 0.573
C804_04198
Pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
    
 0.573
C804_04400
HAD hydrolase, family IA.
    
  0.512
C804_04835
Hypothetical protein.
  
  
  0.486
C804_04399
Hypothetical protein; Belongs to the UbiA prenyltransferase family.
       0.483
C804_04398
Asparagine synthase (glutamine-hydrolyzing).
       0.482
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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