Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04430Hypothetical protein. (168 aa)    
Predicted Functional Partners:
C804_04431
Hypothetical protein.
       0.773
C804_04428
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
  0.615
C804_05636
Chorismate mutase.
    
  0.598
accD
acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
     
  0.568
C804_04433
Hypothetical protein.
 
    
0.561
C804_04432
Hypothetical protein.
       0.545
C804_04429
Hypothetical protein.
       0.519
C804_04299
Hypothetical protein.
    
  0.517
C804_04298
Pyruvate/2-ketoisovalerate family 2-oxoacid:acceptor oxidoreductase, gamma subunit.
    
  0.501
C804_00714
Hypothetical protein.
    
 0.495
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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