Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
C804_04439CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase; Belongs to the DegT/DnrJ/EryC1 family. (446 aa)    
Predicted Functional Partners:
C804_04445
CDP-glucose 4,6-dehydratase.
 
 
  0.963
C804_04438
Glucose-1-phosphate cytidylyltransferase.
 
  
 0.943
C804_04443
Hypothetical protein.
 
 
  0.909
C804_04506
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.908
C804_04442
Hypothetical protein; Belongs to the TPP enzyme family.
 
     0.890
C804_04441
Hypothetical protein.
    
  0.857
C804_04444
Hypothetical protein.
 
    0.797
C804_04432
Hypothetical protein.
 
 
  0.790
C804_04440
Hypothetical protein.
       0.779
C804_03103
Hypothetical protein.
  
 
 0.754
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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