Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04447Hypothetical protein. (347 aa)    
Predicted Functional Partners:
C804_04448
Hypothetical protein.
 
    
0.777
C804_04366
Hypothetical protein.
     
  0.708
C804_02910
Hypothetical protein.
  
     0.675
C804_02192
Hypothetical protein.
  
     0.640
C804_04451
Hypothetical protein.
    
  0.612
C804_04349
Hypothetical protein.
  
     0.609
C804_04421
Hypothetical protein.
  
     0.608
C804_04409
Hypothetical protein.
  
     0.604
C804_02195
Hypothetical protein.
  
     0.597
C804_00186
Hypothetical protein.
  
     0.591
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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