Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04476Hypothetical protein. (1083 aa)    
Predicted Functional Partners:
C804_04192
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.803
C804_01544
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.794
C804_00855
Hypothetical protein.
  
   
 0.739
C804_05369
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 0.706
C804_02606
Hypothetical protein.
  
     0.702
C804_02903
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.696
C804_01306
Hypothetical protein.
 
 
 0.690
C804_01850
Hypothetical protein; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.689
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.686
C804_04522
Hypothetical protein.
 
 
 0.677
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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