Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04487Hypothetical protein. (345 aa)    
Predicted Functional Partners:
C804_04488
Hypothetical protein.
       0.806
C804_04489
Hypothetical protein.
       0.747
C804_04490
Hypothetical protein.
       0.747
C804_04486
Hypothetical protein.
       0.528
C804_04491
Hypothetical protein.
       0.424
C804_04483
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
       0.419
C804_04484
WecB/TagA/CpsF family glycosyltransferase; Belongs to the glycosyltransferase 26 family.
       0.419
C804_04485
Hypothetical protein.
       0.419
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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