Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04490Hypothetical protein. (112 aa)    
Predicted Functional Partners:
C804_04489
Hypothetical protein.
 
    0.991
C804_04488
Hypothetical protein.
       0.762
C804_04487
Hypothetical protein.
       0.747
C804_03108
TDP-4-keto-6-deoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.564
C804_04501
Hypothetical protein.
 
   
 0.546
C804_04498
Hypothetical protein.
 
   
 0.544
C804_04499
Hypothetical protein.
 
  
 0.525
C804_04500
Hypothetical protein.
 
  
 0.522
C804_04491
Hypothetical protein.
 
     0.506
C804_04486
Hypothetical protein.
       0.505
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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