Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04519Hypothetical protein. (334 aa)    
Predicted Functional Partners:
galT
Galactose-1-phosphate uridylyltransferase.
  
  
 0.794
C804_02694
Hypothetical protein.
  
     0.752
C804_04520
Hypothetical protein.
       0.661
C804_05431
Hypothetical protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.632
C804_05432
Simple sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.626
C804_04521
Hypothetical protein.
       0.623
C804_06077
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.622
C804_05430
Simple sugar transport system ATP-binding protein.
 
 
 0.607
C804_00566
Thioredoxin-disulfide reductase.
    
 
 0.587
C804_03136
HPr family phosphocarrier.
   
 
 0.587
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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