macB protein (Lachnospiraceae bacterium A4) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

macB

ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (247 aa)

Predicted Functional Partners:

C804_04537

0.998

C804_02797

0.991

C804_04536

0.947

C804_00667

0.945

C804_00214

0.942

C804_05503

0.897

C804_00084

0.775

C804_02610

0.718

C804_04308

0.633

C804_02795

0.623

Your Current Organism:

Lachnospiraceae bacterium A4

NCBI taxonomy Id: 397291
Other names: L. bacterium A4

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C804_00084	C804_04308	C804_00084	C804_04308	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.689
C804_00084	macB	C804_00084	C804_04535	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.775
C804_00214	C804_02797	C804_00214	C804_02797	Hypothetical protein.	Hypothetical protein.	0.434
C804_00214	C804_04537	C804_00214	C804_04537	Hypothetical protein.	Hypothetical protein.	0.459
C804_00214	macB	C804_00214	C804_04535	Hypothetical protein.	ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.942
C804_00667	C804_02795	C804_00667	C804_02795	Hypothetical protein; Belongs to the phosphatidylserine decarboxylase family.	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	0.418
C804_00667	C804_02797	C804_00667	C804_02797	Hypothetical protein; Belongs to the phosphatidylserine decarboxylase family.	Hypothetical protein.	0.443
C804_00667	C804_04537	C804_00667	C804_04537	Hypothetical protein; Belongs to the phosphatidylserine decarboxylase family.	Hypothetical protein.	0.459
C804_00667	macB	C804_00667	C804_04535	Hypothetical protein; Belongs to the phosphatidylserine decarboxylase family.	ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.945
C804_02610	C804_02795	C804_02610	C804_02795	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	0.725
C804_02610	C804_02797	C804_02610	C804_02797	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein.	0.870
C804_02610	C804_04536	C804_02610	C804_04536	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.849
C804_02610	C804_04537	C804_02610	C804_04537	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein.	0.844
C804_02610	C804_05503	C804_02610	C804_05503	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Hypothetical protein.	0.846
C804_02610	macB	C804_02610	C804_04535	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.	0.718
C804_02795	C804_00667	C804_02795	C804_00667	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	Hypothetical protein; Belongs to the phosphatidylserine decarboxylase family.	0.418
C804_02795	C804_02610	C804_02795	C804_02610	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.725
C804_02795	C804_02797	C804_02795	C804_02797	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	Hypothetical protein.	0.971
C804_02795	C804_04536	C804_02795	C804_04536	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.731
C804_02795	C804_04537	C804_02795	C804_04537	Efflux transporter, RND family, MFP subunit; Overlaps another CDS with the same product name.	Hypothetical protein.	0.849

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About