Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04538Hypothetical protein. (159 aa)    
Predicted Functional Partners:
C804_04539
YjeE family ATPase.
       0.806
C804_01864
Hypothetical protein.
  
     0.724
C804_03328
Hypothetical protein.
  
     0.711
C804_04540
Universal bacterial protein YeaZ.
       0.701
C804_02398
Hypothetical protein.
  
     0.666
C804_02370
Hypothetical protein.
  
     0.647
C804_05528
Hypothetical protein.
  
     0.640
C804_04542
Hypothetical protein.
 
     0.639
C804_04610
Hypothetical protein.
  
     0.631
C804_01863
Hypothetical protein.
  
     0.559
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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