Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04564Hypothetical protein. (568 aa)    
Predicted Functional Partners:
C804_04563
Hypothetical protein.
 
 
   0.879
C804_04562
Hypothetical protein.
       0.762
C804_02272
Hypothetical protein.
 
 
0.727
C804_04560
Cys-rich peptide radical SAM maturase CcpM.
 
     0.694
C804_04227
Hypothetical protein.
  
     0.691
C804_04561
TIGR04066 family peptide maturation system protein.
       0.683
C804_02760
Hypothetical protein.
  
  
  0.647
C804_01912
Hypothetical protein.
 
 
0.629
C804_05746
Hypothetical protein.
  
 
   0.624
C804_00226
Hypothetical protein.
  
  
  0.592
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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