Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04598Hypothetical protein. (739 aa)    
Predicted Functional Partners:
C804_01435
Hypothetical protein; Belongs to the peptidase S11 family.
 
 
  0.492
C804_04599
Hypothetical protein.
       0.468
C804_04600
Hypothetical protein; Belongs to the sigma-70 factor family.
       0.468
C804_01259
Hypothetical protein.
  
  
 0.461
C804_01260
Hypothetical protein.
  
  
 0.455
C804_00639
Hypothetical protein.
     
 0.453
C804_02366
Hypothetical protein.
     
 0.434
C804_02160
Hypothetical protein; Belongs to the peptidase S11 family.
 
 
  0.432
C804_00736
Hypothetical protein; Belongs to the peptidase S11 family.
 
 
  0.426
C804_04601
Sigma-70 family RNA polymerase sigma factor.
  
    0.425
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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