Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04652Hypothetical protein. (219 aa)    
Predicted Functional Partners:
C804_04653
Hypothetical protein.
 
     0.877
C804_04654
Hypothetical protein.
 
     0.864
C804_04660
Hypothetical protein.
 
     0.740
C804_04656
Hypothetical protein.
 
     0.717
C804_04657
Hypothetical protein.
 
     0.715
C804_04663
Hypothetical protein.
 
     0.711
C804_04661
Hypothetical protein.
 
     0.709
C804_04664
Hypothetical protein.
 
     0.691
C804_04655
Hypothetical protein.
 
     0.554
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.515
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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