Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04680Hypothetical protein. (215 aa)    
Predicted Functional Partners:
C804_04084
Hypothetical protein.
    
 0.864
C804_04679
TIGR00027 family methyltransferase.
 
  
 0.823
C804_02621
Hypothetical protein; Belongs to the FPP/GGPP synthase family.
  
 0.745
C804_00183
Hypothetical protein.
  
  
 0.628
C804_03281
Hypothetical protein.
  
  
 0.623
C804_04501
Hypothetical protein.
  
 0.621
C804_00384
Hypothetical protein.
     
 0.590
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.580
C804_04676
Hypothetical protein.
 
     0.574
C804_00797
Methionine synthase.
    
 0.558
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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