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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C804_04802Hypothetical protein. (435 aa)    
Predicted Functional Partners:
C804_05636
Chorismate mutase.
  
 
 0.763
C804_00797
Methionine synthase.
   
 
  0.712
C804_01500
Hypothetical protein.
  
  
 0.513
C804_01189
Branched-chain amino acid aminotransferase.
  
 
 0.507
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
     
 0.488
C804_00854
Hypothetical protein.
  
 
 0.486
C804_03444
Hypothetical protein.
   
  0.485
C804_04801
Hypothetical protein.
       0.482
C804_04513
Hypothetical protein.
  
 
 0.475
asnS
asparaginyl-tRNA synthetase.
    
  0.454
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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