Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_04861Hypothetical protein. (305 aa)    
Predicted Functional Partners:
C804_04858
Helicase-exonuclease AddAB, AddB subunit; ATP-dependent DNA helicase.
       0.709
C804_04860
Hypothetical protein.
  
    0.708
addA
Helicase-exonuclease AddAB, AddA subunit; ATP-dependent DNA helicase.
       0.701
C804_02392
Hypothetical protein.
    
   0.598
C804_04093
Hypothetical protein.
  
    0.555
C804_04283
Hypothetical protein.
  
     0.529
C804_02877
Hypothetical protein.
  
 
 0.518
C804_04857
Oligoendopeptidase F.
       0.483
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
   
    0.471
C804_05585
Hypothetical protein.
   
    0.471
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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