Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C804_05065Hypothetical protein. (208 aa)    
Predicted Functional Partners:
C804_05066
Hypothetical protein.
       0.788
C804_05067
Hypothetical protein.
       0.747
C804_05068
Hypothetical protein.
       0.714
C804_05070
Hypothetical protein.
       0.714
C804_05069
Hypothetical protein.
       0.703
C804_05064
Hypothetical protein.
       0.622
C804_05062
Hypothetical protein.
       0.566
C804_05063
Hypothetical protein.
       0.566
C804_05061
Hypothetical protein.
       0.561
C804_05071
YD repeat (two copies).
       0.527
Your Current Organism:
Lachnospiraceae bacterium A4
NCBI taxonomy Id: 397291
Other names: L. bacterium A4
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