Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB88913.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (97 aa)    
Predicted Functional Partners:
KXB88912.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.596
KXB88914.1
KEGG: ddf:DEFDS_0644 0.0011 hypothetical protein; K00805 heptaprenyl diphosphate synthase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.572
KXB88911.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.448
KXB88915.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.443
KXB88916.1
Toxin-antitoxin system, toxin component, RelE family.
       0.443
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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