Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MinDCobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: ava:Ava_3478 6.0e-28 septum site-determining protein MinD K03609; Psort location: CytoplasmicMembrane, score: 7.88. (307 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
    0.929
mreD
Rod shape-determining protein MreD; KEGG: abo:ABO_2324 0.0068 algZ; two-component system sensor protein, alginate biosynthesis; K08082 two-component system, LytT family, sensor histidine kinase AlgZ; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.910
MreB_1
KEGG: hpx:HMPREF0462_0035 2.9e-58 rod shape-determining protein K03569; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.876
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
    0.828
PbpA
Penicillin-binding protein 2; KEGG: sri:SELR_24010 1.0e-160 pbpA; putative peptidoglycan glycosyltransferase K05515; Psort location: CytoplasmicMembrane, score: 9.82.
     
 0.827
KXB87883.1
Radical SAM-linked protein; KEGG: sat:SYN_01355 1.2e-14 Fe-S oxidoreductase K03423; Psort location: Cytoplasmic, score: 8.96.
       0.680
KXB87884.1
Radical SAM domain protein; KEGG: ctc:CTC02064 6.8e-178 Fe-S oxidoreductase K03423; Psort location: Cytoplasmic, score: 8.96.
       0.680
Rng
KEGG: vpr:Vpar_1219 1.7e-243 ribonuclease, Rne/Rng family; K08301 ribonuclease G; Psort location: Cytoplasmic, score: 9.97.
   
   0.556
MreB_2
Cell shape determining protein, MreB/Mrl family; KEGG: lru:HMPREF0538_21740 9.0e-73 ppx6; exopolyphosphatase K03569; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.535
KXB87891.1
KEGG: apb:SAR116_0666 4.3e-18 DNA repair protein RadC K03630; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0758 family.
  
    0.523
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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