Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YbjJKEGG: apb:SAR116_1990 2.2e-30 major facilitator superfamily protein; Psort location: CytoplasmicMembrane, score: 10.00. (394 aa)    
Predicted Functional Partners:
KXB87578.1
Transporter, anaerobic C4-dicarboxylate uptake C family; KEGG: ccv:CCV52592_2073 2.6e-19 orotate phosphoribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.498
KXB84361.1
Ser/Thr phosphatase family protein; KEGG: fnu:FN1603 2.6e-162 2',3'-cyclic nucleotide 2'-phosphodiesterase K01121; Psort location: Cytoplasmic, score: 8.96.
  
     0.465
BrkA
Outer membrane autotransporter barrel domain protein; KEGG: ssn:SSON_3223 1.2e-17 sigA; serine protease; K12684 serine protease autotransporter; Psort location: Extracellular, score: 9.46.
  
     0.437
FruA
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vpr:Vpar_1578 0. PTS system fructose subfamily transporter subunit IIC; K02768 PTS system, fructose-specific IIA component; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
   
  
 0.432
PorA_1
KEGG: vpr:Vpar_1390 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
     
 0.428
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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