Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KXB87603.1Hypothetical protein; KEGG: npu:Npun_R5132 1.2e-10 iron-sulfur cluster binding protein; Psort location: Cytoplasmic, score: 8.96. (321 aa)    
Predicted Functional Partners:
KXB88351.1
KEGG: gym:GYMC10_0856 7.9e-34 iron-sulfur cluster-binding protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.731
KXB87605.1
Hypothetical protein; Belongs to the UPF0342 family.
 
     0.565
nnrD
YjeF domain protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...]
     
 0.524
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.494
KXB87601.1
Hypothetical protein.
       0.448
typA
KEGG: cch:Cag_1518 1.8e-186 GTP-binding protein TypA K06207; Psort location: CytoplasmicMembrane, score: 7.88.
       0.448
PorA_1
KEGG: vpr:Vpar_1390 0. pyruvate ferredoxin/flavodoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
     
 0.432
BrkA
Outer membrane autotransporter barrel domain protein; KEGG: ssn:SSON_3223 1.2e-17 sigA; serine protease; K12684 serine protease autotransporter; Psort location: Extracellular, score: 9.46.
 
     0.409
TrmL
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
     
 0.404
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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