Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RbsK_2Kinase, PfkB family; KEGG: sat:SYN_02874 3.1e-28 ribokinase K00852; Psort location: Cytoplasmic, score: 9.97. (338 aa)    
Predicted Functional Partners:
KtrB
KEGG: tit:Thit_0173 3.1e-86 potassium uptake protein, TrkH family K03498; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
    0.723
KtrA
Putative Ktr system potassium uptake protein A; KEGG: suq:HMPREF0772_12145 7.8e-42 ktrA; Trk family potassium (K+) transporter, NAD+ binding protein K03499; Psort location: Cytoplasmic, score: 8.96.
       0.664
Pyk
Pyruvate kinase; KEGG: vpr:Vpar_1405 7.4e-291 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.537
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
 0.481
RbsA
KEGG: vpr:Vpar_0107 5.9e-250 ABC transporter; K10441 ribose transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.473
RbsB
KEGG: ppy:PPE_02483 1.7e-92 D-ribose-binding protein K10439; Psort location: Periplasmic, score: 9.76.
 
  
 0.464
SodA_2
Superoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 
 0.460
KXB87611.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.459
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 0.459
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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