Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
UlaAKEGG: bmq:BMQ_1023 4.0e-118 putative sugar-specific permease K03475; Psort location: CytoplasmicMembrane, score: 10.00. (455 aa)    
Predicted Functional Partners:
UlaB
KEGG: vpr:Vpar_1347 3.0e-40 PTS system lactose/cellobiose-specific transporter subunit IIB; K02822 PTS system, ascorbate-specific IIB component; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.996
UlaC
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vpr:Vpar_1348 4.3e-73 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02821 PTS system, ascorbate-specific IIA component; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.994
PtsH
KEGG: sri:SELR_26700 3.0e-17 hpr; putative phosphocarrier protein HPr K11189; Psort location: Cytoplasmic, score: 9.26.
    
 0.905
KXB87622.1
Hypothetical protein; KEGG: ssr:SALIVB_1144 2.0e-13 3-isopropylmalate dehydrogenase K09790; Psort location: CytoplasmicMembrane, score: 10.00.
       0.779
FruA
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vpr:Vpar_1578 0. PTS system fructose subfamily transporter subunit IIC; K02768 PTS system, fructose-specific IIA component; K02769 PTS system, fructose-specific IIB component K02770; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.631
tal
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.452
KXB87621.1
KEGG: pmq:PM3016_1208 8.6e-13 AdaA protein; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.406
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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