Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXB87395.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
KXB87396.1
Transcriptional regulator, PadR family; KEGG: ase:ACPL_2208 5.9e-05 Coproporphyrinogen 3 oxidase, aerobic.
  
    0.811
KXB87394.1
Hypothetical protein.
       0.773
KXB87554.1
KEGG: fgr:FG09425.1 4.8e-05 hypothetical protein; K05528 alpha 1,6-mannosyltransferase.
       0.528
HhoB
Trypsin; KEGG: sri:SELR_01250 3.0e-81 putative S1B family protease; Psort location: Periplasmic, score: 9.44.
       0.419
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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