Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YtfL_2CBS domain protein; KEGG: hpa:HPAG1_1423 2.2e-62 hemolysin domain-containing protein K00088; Psort location: CytoplasmicMembrane, score: 10.00. (448 aa)    
Predicted Functional Partners:
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.808
KXB86311.1
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.791
YbeZ
PhoH family protein; KEGG: ttu:TERTU_3875 1.1e-67 phosphate starvation-inducible protein PhoH family protein, ATPase K06217; Psort location: Cytoplasmic, score: 9.97.
  
    0.766
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.761
KXB86306.1
Radical SAM protein family; KEGG: stj:SALIVA_1715 4.9e-49 fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
       0.665
KXB86312.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.578
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.493
KXB86305.1
B12 binding domain protein; KEGG: cpf:CPF_1897 1.2e-88 radical SAM domain-containing protein; K04034 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase; Psort location: Cytoplasmic, score: 8.96.
       0.475
KXB82976.1
Putative lipid A export permease/ATP-binding protein MsbA; KEGG: vpr:Vpar_0539 7.6e-289 ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.
  
   0.410
KXB86313.1
KEGG: reh:H16_A0312 0.0096 nagE; protein-N(pi)-phosphohistidine-sugar phosphotransferase II ABC, N-acetylglucosamine-specific; K02803 PTS system, N-acetylglucosamine-specific IIB component K02804; Psort location: CytoplasmicMembrane, score: 10.00.
       0.406
Your Current Organism:
Veillonella dispar
NCBI taxonomy Id: 39778
Other names: ATCC 17748, DSM 20735, NCTC 11831, V. dispar, Veillonella alcalescens subsp. dispar
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